species:   Scscl
pid:       PID1557
parent:    Ssc-milR-33
paralog:   
locus:     NW_001820811.1:71019-71108
matures:   ['UAGGUGUAGGGGAGCUUGAUUG', 'GUCAAUCUCUCUGUACCUUUA']
srr:       SRR12527898
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527898.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527898.cram NW_001820811.1:71019-71108

0 out of bounds
3 alignments
3 proper strand
3 stranded perfect matches

          ***********************                       ************************          
GUAUUUUCAUAUGUCAAUCUCUCUGUACCUUUAGCUAAAGCUAAUACAGUUUCGAAUAUAGGUGUAGGGGAGCUUGAUUGAUGACGAGCC
......((((..(((((.((((((.(((((.((....(((((.....)))))....)).)))))..)))))).)))))..))))......
----------------------------------------------------------UAGGUGUAGGGGAGCUUGAUUG---------- l=22 a=0 c
------------GUCAAUCUCUCUGUACCUUUA--------------------------------------------------------- l=21 a=0 c*
--------------------------------------------UACAGUUUCGAAUAUAGGUGUA------------------------ l=22 a=2 ma
------------GUCAAUCUCUCUGUACCUUUA--------------------------------------------------------- l=21 a=0 ma*

--------------------------------------------UACAGUUUCGAAUAUAGGUGUA------------------------ l=22 a=2 (ma)
--------------------------------------------------------UAUAGGUGUAGGGGAGCUUGAUU----------- l=23 a=1 

mb-00010
ax-1011011
ku-01
ss-111111101110
fn-111
